This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PSHU.1

Portugal/PTCulexWNV_AS49_INSA2025/2025-10-30
R. Gutierrez-Lopez, F. Amaro, V. Borges, M. P. Sanchez-Seco, H. Costa Osorio, H. Cortes, D. Sobral, J. P. Gomes, A. Vazquez & L. Ze-Ze

Instituto Nacional de Saude Dr. Ricardo Jorge, Lisboa

Sample details

Collection date
2025-10-30
Earliest release date
2026-05-14
Sampling location
Portugal
Isolate name
PTCulexWNV_AS49_INSA2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-21 12:05insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2026-05-14
NCBI update date
2026-05-15
INSDC accession
BioProject accession
BioSample accession
Raw reads accession

Host

Host

Submission details

Submission ID
OZ470015.1
Submitting group
Date submitted
2026-05-21 12:05:42 UTC
Date released
2026-05-21 12:31:32 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
467
Length
10967 (99.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:I8T
  • NS1:A70S
  • NS2A:L158M
  • NS3:I175V
  • NS4B:E249D
  • NS5:V74I
  • NS5:K177R
  • NS5:K280R
  • NS5:E370G
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A50G
  • T195A
  • T234C
  • C282T
  • A321G
  • C340T
  • G354A
  • G447T
  • C483T
  • G492A
  • G495T
  • C561T
  • C600T
  • T606C
  • T615C
  • A630G
  • T639C
  • T642C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:I8T
  • NS1:A70S

NS2A

  • NS2A:L158M

NS2B

  • NS2B:V103A

NS3

  • NS3:I175V
  • NS3:P249T
  • NS3:T356I

NS4A

  • NS4A:A85V

NS4B

  • NS4B:E249D

NS5

  • NS5:V74I
  • NS5:K280R
  • NS5:E370G

env

  • env:R93K
  • env:I126T
  • env:V159I
  • env:L167F
Deletions
N/A
Insertions
N/A

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