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LOC_000PSGX.1
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Download FASTA
Download metadata TSV
Portugal/PTCulexWNV_SM103_INSA2025/2025-10-30
R. Gutierrez-Lopez,
F. Amaro,
V. Borges,
M. P. Sanchez-Seco,
H. Costa Osorio,
H. Cortes,
D. Sobral,
J. P. Gomes,
A. Vazquez &
L. Ze-Ze
Instituto Nacional de Saude Dr. Ricardo Jorge, Lisboa
Sample details
Collection date
2025-10-30
Earliest release date
2026-05-14
Sampling location
Portugal
Isolate name
PTCulexWNV_SM103_INSA2025
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-05-21 12:05
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2026-05-14
NCBI update date
2026-05-15
INSDC accession
OZ470014.1
BioProject accession
PRJEB87871
BioSample accession
SAMEA122237255
Raw reads accession
ERR17072040
Host
Host
mosquitos (Culex univittatus)
Submission details
Submission ID
OZ470014.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-21 12:05:42 UTC
Date released
2026-05-21 12:31:32 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000PSGX.1.embl
Alignment and QC
Total SNPs
481
Length
10965 (99.4%)
Amino Acid Mutations from founder clade
2K:
L
15
M
NS1:
A
70
S
NS1:
T
284
M
NS1:
D
310
E
NS2A:
L
158
M
NS3:
I
175
V
NS3:
I
462
V
NS4B:
E
249
D
NS5:
K
177
R
NS5:
K
280
R
capsid:
T
109
I
capsid:
I
118
V
env:
N
475
S
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
T
195
A
T
234
C
C
282
T
C
340
T
G
354
A
C
422
T
G
447
T
A
448
G
G
492
A
G
495
T
C
561
T
C
600
T
T
606
C
T
615
C
A
630
G
T
639
C
G
786
A
T
826
C
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_009942.1
reference
Substitutions
NS1
NS1:
A
70
S
NS1:
T
284
M
NS1:
D
310
E
NS2A
NS2A:
L
158
M
NS2B
NS2B:
V
103
A
NS3
NS3:
I
175
V
NS3:
P
249
T
NS3:
T
356
I
NS3:
I
462
V
NS4A
NS4A:
A
85
V
NS4B
NS4B:
E
249
D
NS5
NS5:
K
280
R
capsid
capsid:
T
109
I
capsid:
I
118
V
env
env:
R
93
K
env:
I
126
T
env:
V
159
I
env:
L
167
F
env:
N
475
S
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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